PhanerochaeteV1, Main, Exploration, bibRecord, 000300

Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa.

Identifieur interne : 000300 ( Main/Exploration ); précédent : 000299; suivant : 000301

Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa.

Auteurs : Hitoshi Suzuki [Canada] ; Thu V. Vuong [Canada] ; Yunchen Gong [Canada] ; Kin Chan [Canada] ; Chi-Yip Ho [Canada] ; Emma R. Master [Canada] ; Akihiko Kondo [Japon]

Source :

Fungal genetics and biology : FG & B [ 1096-0937 ] ; 2014.

RBID : pubmed:24880035

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Motifs (MeSH), Amino Acid Sequence (MeSH), Binding Sites (MeSH), Cluster Analysis (MeSH), Conserved Sequence (MeSH), Fungal Proteins (biosynthesis), Fungal Proteins (genetics), Gene Expression Profiling (MeSH), Genetic Variation (MeSH), Models, Molecular (MeSH), Molecular Sequence Data (MeSH), Phanerochaete (genetics), Phylogeny (MeSH), Protein Conformation (MeSH), Sequence Homology, Amino Acid (MeSH).
MESH :
- chemical , biosynthesis : Fungal Proteins.
- chemical , genetics : Fungal Proteins.
- genetics : Phanerochaete.
- Amino Acid Motifs, Amino Acid Sequence, Binding Sites, Cluster Analysis, Conserved Sequence, Gene Expression Profiling, Genetic Variation, Models, Molecular, Molecular Sequence Data, Phylogeny, Protein Conformation, Sequence Homology, Amino Acid.

Abstract

Expansin and expansin-related proteins loosen plant cell wall architectures and are widely distributed in several types of organisms, including plants, fungi and bacteria. Here we describe sequence diversity and unique gene expression profiles of multiple expansin-related proteins identified in the basidiomycete, Phanerochaete carnosa. The protein sequences were homologous to loosenin, an expansin-related protein reported in the basidiomycete, Bjerkandera adusta. We identified homologous sequences of each of those P. carnosa proteins in many basidiomycete species. Twelve P. carnosa loosenin-like proteins (LOOLs) were classified into two subgroups according to sequence homology. Conservation of polysaccharide-binding amino acid residues was stricter in subgroup A. Subgroup A sequences included a conserved 8-9 amino acid insertion in a polysaccharide-binding groove whereas subgroup B contained a 12-18 amino acid insertion next to the binding groove. The P. carnosa genome also encodes the expansin-related protein, DREX1, which adopts a loosenin-like structure but has lower sequence homology to other LOOLs. The gene expression analysis of those proteins showed distinct patterns that were not significantly related to subgroupings. The variation in the protein sequences and gene expression patterns, and wide distribution among the basidiomycota, suggest that the diverse cell wall loosening proteins contribute to effective plant cell wall association and utilization by basidiomycetes.

DOI: 10.1016/j.fgb.2014.05.008
PubMed: 24880035

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Cluster Analysis (MeSH)</term>
<term>Conserved Sequence (MeSH)</term>
<term>Fungal Proteins (biosynthesis)</term>
<term>Fungal Proteins (genetics)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Genetic Variation (MeSH)</term>
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<term>Molecular Sequence Data (MeSH)</term>
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<term>Analyse de regroupements (MeSH)</term>
<term>Conformation des protéines (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Modèles moléculaires (MeSH)</term>
<term>Motifs d'acides aminés (MeSH)</term>
<term>Phanerochaete (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines fongiques (biosynthèse)</term>
<term>Protéines fongiques (génétique)</term>
<term>Similitude de séquences d'acides aminés (MeSH)</term>
<term>Sites de fixation (MeSH)</term>
<term>Séquence conservée (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
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<term>Cluster Analysis</term>
<term>Conserved Sequence</term>
<term>Gene Expression Profiling</term>
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<term>Models, Molecular</term>
<term>Molecular Sequence Data</term>
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<front><div type="abstract" xml:lang="en">Expansin and expansin-related proteins loosen plant cell wall architectures and are widely distributed in several types of organisms, including plants, fungi and bacteria. Here we describe sequence diversity and unique gene expression profiles of multiple expansin-related proteins identified in the basidiomycete, Phanerochaete carnosa. The protein sequences were homologous to loosenin, an expansin-related protein reported in the basidiomycete, Bjerkandera adusta. We identified homologous sequences of each of those P. carnosa proteins in many basidiomycete species. Twelve P. carnosa loosenin-like proteins (LOOLs) were classified into two subgroups according to sequence homology. Conservation of polysaccharide-binding amino acid residues was stricter in subgroup A. Subgroup A sequences included a conserved 8-9 amino acid insertion in a polysaccharide-binding groove whereas subgroup B contained a 12-18 amino acid insertion next to the binding groove. The P. carnosa genome also encodes the expansin-related protein, DREX1, which adopts a loosenin-like structure but has lower sequence homology to other LOOLs. The gene expression analysis of those proteins showed distinct patterns that were not significantly related to subgroupings. The variation in the protein sequences and gene expression patterns, and wide distribution among the basidiomycota, suggest that the diverse cell wall loosening proteins contribute to effective plant cell wall association and utilization by basidiomycetes. </div>
</front>
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<Month>07</Month>
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<Title>Fungal genetics and biology : FG & B</Title>
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<ArticleTitle>Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa.</ArticleTitle>
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<Abstract><AbstractText>Expansin and expansin-related proteins loosen plant cell wall architectures and are widely distributed in several types of organisms, including plants, fungi and bacteria. Here we describe sequence diversity and unique gene expression profiles of multiple expansin-related proteins identified in the basidiomycete, Phanerochaete carnosa. The protein sequences were homologous to loosenin, an expansin-related protein reported in the basidiomycete, Bjerkandera adusta. We identified homologous sequences of each of those P. carnosa proteins in many basidiomycete species. Twelve P. carnosa loosenin-like proteins (LOOLs) were classified into two subgroups according to sequence homology. Conservation of polysaccharide-binding amino acid residues was stricter in subgroup A. Subgroup A sequences included a conserved 8-9 amino acid insertion in a polysaccharide-binding groove whereas subgroup B contained a 12-18 amino acid insertion next to the binding groove. The P. carnosa genome also encodes the expansin-related protein, DREX1, which adopts a loosenin-like structure but has lower sequence homology to other LOOLs. The gene expression analysis of those proteins showed distinct patterns that were not significantly related to subgroupings. The variation in the protein sequences and gene expression patterns, and wide distribution among the basidiomycota, suggest that the diverse cell wall loosening proteins contribute to effective plant cell wall association and utilization by basidiomycetes. </AbstractText>
<CopyrightInformation>Copyright © 2014 Elsevier Inc. All rights reserved.</CopyrightInformation>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Suzuki</LastName>
<ForeName>Hitoshi</ForeName>
<Initials>H</Initials>
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<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D020816" MajorTopicYN="N">Amino Acid Motifs</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001665" MajorTopicYN="N">Binding Sites</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017124" MajorTopicYN="N">Conserved Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName>
<QualifierName UI="Q000096" MajorTopicYN="Y">biosynthesis</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008958" MajorTopicYN="N">Models, Molecular</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020075" MajorTopicYN="N">Phanerochaete</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011487" MajorTopicYN="N">Protein Conformation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Cell wall loosening</Keyword>
<Keyword MajorTopicYN="N">Expansin</Keyword>
<Keyword MajorTopicYN="N">Gene expression</Keyword>
<Keyword MajorTopicYN="N">Loosenin</Keyword>
<Keyword MajorTopicYN="N">Phanerochaete carnosa</Keyword>
<Keyword MajorTopicYN="N">Sequence homology</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year>
<Month>01</Month>
<Day>27</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2014</Year>
<Month>05</Month>
<Day>07</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2014</Year>
<Month>05</Month>
<Day>19</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2014</Year>
<Month>6</Month>
<Day>1</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2014</Year>
<Month>6</Month>
<Day>1</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2015</Year>
<Month>7</Month>
<Day>16</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">24880035</ArticleId>
<ArticleId IdType="pii">S1087-1845(14)00086-3</ArticleId>
<ArticleId IdType="doi">10.1016/j.fgb.2014.05.008</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Canada</li>
<li>Japon</li>
</country>
<region><li>Ontario</li>
</region>
<settlement><li>Toronto</li>
</settlement>
<orgName><li>Université de Toronto</li>
</orgName>
</list>
<tree><country name="Canada"><region name="Ontario"><name sortKey="Suzuki, Hitoshi" sort="Suzuki, Hitoshi" uniqKey="Suzuki H" first="Hitoshi" last="Suzuki">Hitoshi Suzuki</name>
</region>
<name sortKey="Chan, Kin" sort="Chan, Kin" uniqKey="Chan K" first="Kin" last="Chan">Kin Chan</name>
<name sortKey="Gong, Yunchen" sort="Gong, Yunchen" uniqKey="Gong Y" first="Yunchen" last="Gong">Yunchen Gong</name>
<name sortKey="Ho, Chi Yip" sort="Ho, Chi Yip" uniqKey="Ho C" first="Chi-Yip" last="Ho">Chi-Yip Ho</name>
<name sortKey="Master, Emma R" sort="Master, Emma R" uniqKey="Master E" first="Emma R" last="Master">Emma R. Master</name>
<name sortKey="Vuong, Thu V" sort="Vuong, Thu V" uniqKey="Vuong T" first="Thu V" last="Vuong">Thu V. Vuong</name>
</country>
<country name="Japon"><noRegion><name sortKey="Kondo, Akihiko" sort="Kondo, Akihiko" uniqKey="Kondo A" first="Akihiko" last="Kondo">Akihiko Kondo</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

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	Serveur d'exploration sur le phanerochaete
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Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa.

Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa.

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